|
| Status |
Public on Mar 01, 2022 |
| Title |
GIST54 |
| Sample type |
genomic |
| |
|
| Source name |
GIST fibroblast
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: fibroblasts from non-tumoral region of GIST patient
pathological type: GIST, H.pylori(-)
tumor stage: NA
|
| Growth protocol |
CAFs or GIST fibroblasts were maintained in MF medium.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
High-quality DNA was extracted by the phenol/chloroform method.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Standard Illumina Protocol
|
| Scan protocol |
Arrays were imaged using Illumina iScan according to manufacturer's specifications (Illumina Inc.).
|
| Data processing |
The data were analyzed using GenomeStudio Methylation Module Software (v1.9.0). Beta values were obtained after background correction and normalization to internal controls.
|
| |
|
| Submission date |
Jan 24, 2022 |
| Last update date |
Mar 02, 2022 |
| Contact name |
Yoshimi Yasukawa |
| E-mail(s) |
yoshimiyasukawa@yahoo.co.jp
|
| Organization name |
national cancer center research institute, Japan
|
| Street address |
3-20-6
|
| City |
Yushima, Bunkyo-ku |
| ZIP/Postal code |
1130034 |
| Country |
Japan |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE194259 |
Genome-wide DNA methylation status of scirrhous CAF, non-scirrhous CAF, and GIST fibroblast |
|
