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Sample GSM579773 Query DataSets for GSM579773
Status Public on Aug 16, 2010
Title AJ_AP7D1_h2
Sample type genomic
Source name DNA extraced from blood
Organism Homo sapiens
Characteristics population: Ashkenazi Jew
individual id: AP7D1_h2
Extracted molecule genomic DNA
Extraction protocol DNA was extraced from blood using theGentra PureGene DNA extraction kit or the Qiagen DNA extraction kit
Label biotin
Label protocol As per manufacturer (Affymetrix)
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
Data processing Genotype data was extracted from CEL files using Affymetrix birdseed v2.0. We removed SNPs that failed the Hardy-Weinberg exact test P < 0.000001 and had a call rate <95% across all samples
primary data description: Genotype data is in PLINK ped and map formats - GSE23636_AJ_471_732k.ped and (see readme file for description). The PLINK version: 1.06.
Submission date Aug 16, 2010
Last update date Aug 16, 2010
Contact name Steven M Bray
Organization name Emory University School of Medicine
Department Human Genetics
Street address 615 Michael Street
City Atlanta
State/province GA
ZIP/Postal code 30322
Country USA
Platform ID GPL6801
Series (1)
GSE23636 Population genetic structure of the Ashkenazi Jewish population

Supplementary file Size Download File type/resource
GSM579773_AP7D1_h2.CEL.gz 33.1 Mb (ftp)(http) CEL
Processed data are available on Series record

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