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Sample GSM579615 Query DataSets for GSM579615
Status Public on Aug 16, 2010
Title AJ_AP4B8
Sample type genomic
 
Source name DNA extraced from blood
Organism Homo sapiens
Characteristics population: Ashkenazi Jew
individual id: AP4B8
Extracted molecule genomic DNA
Extraction protocol DNA was extraced from blood using theGentra PureGene DNA extraction kit or the Qiagen DNA extraction kit
Label biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
Data processing Genotype data was extracted from CEL files using Affymetrix birdseed v2.0. We removed SNPs that failed the Hardy-Weinberg exact test P < 0.000001 and had a call rate <95% across all samples
primary data description: Genotype data is in PLINK ped and map formats - GSE23636_AJ_471_732k.ped and GSE23636_AJ_471_732k.map (see readme file for description). The PLINK version: 1.06.
 
Submission date Aug 16, 2010
Last update date Aug 16, 2010
Contact name Steven M Bray
E-mail(s) smbray@emory.edu
Organization name Emory University School of Medicine
Department Human Genetics
Street address 615 Michael Street
City Atlanta
State/province GA
ZIP/Postal code 30322
Country USA
 
Platform ID GPL6801
Series (1)
GSE23636 Population genetic structure of the Ashkenazi Jewish population

Supplementary file Size Download File type/resource
GSM579615_AP4B8.CEL.gz 34.7 Mb (ftp)(http) CEL
Processed data are available on Series record

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