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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 07, 2022 |
| Title |
sgScramble4 |
| Sample type |
SRA |
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| Source name |
Subcutaneous PDA tumor
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| Organism |
Mus musculus |
| Characteristics |
tumor stage: 2 weeks after inoculation
cancer cell type: 1242 KPC cell
mouse strain: C57BL/6
condition: Control tumor
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| Treatment protocol |
No treatment
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| Growth protocol |
Subcutaneous tumors
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
Qiagen RNAeasy Kit
Illumina TrueSeq
10nM cDNA, 12 cycles for cDNA amplification
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Base-calling
Alignment
Filtering
Peak-calling
Normalization
Genome_build: mm10
Supplementary_files_format_and_content: txt
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| Submission date |
Jan 04, 2022 |
| Last update date |
Jan 07, 2022 |
| Contact name |
Zhikai Wang |
| E-mail(s) |
wang.zhikai.1@gmail.com
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| Organization name |
Cold Spring Harbor Laboratory
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| Lab |
Fearon Lab
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| Street address |
1 Bungtown Road
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| City |
Cold Spring Harbor |
| State/province |
NY |
| ZIP/Postal code |
11724 |
| Country |
USA |
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| Platform ID |
GPL19057 |
| Series (1) |
| GSE193027 |
The immunological comparison of control PDA tumors and Krt19-edited PDA tumors |
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| Relations |
| BioSample |
SAMN24613205 |
| SRA |
SRX13601457 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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