GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM575202 Query DataSets for GSM575202
Status Public on Jan 14, 2013
Title TUMOR_rap14 2
Sample type RNA
Source name Mus musculus
Organism Mus musculus
Characteristics subtype: TUMOR
treatment: rapamycin
days: 14
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label Agilent part #5190-0442 Quick-Amp Labeling kit 1-color.
Label protocol 300 ng of Qiagen-purified total RNA
Hybridization protocol Agilent hybridization protocol 65C 10rpm 17 h.
Scan protocol Agilent arrays were scanned using the Agilent Scanner G2565BA.
Description Gene expression data were obtained from normal tissue, untreated tumors, and tumors treated with rapamycin.
Data processing The data was first processed by background correction and then quantile normalization.
Submission date Aug 05, 2010
Last update date Jan 14, 2013
Contact name Karl Dykema
Organization name Van Andel Institute
Lab Lab of Computational Biology
Street address 333 Bostwick Ave. NE
City Grand Rapids
State/province MI
ZIP/Postal code 49503
Country USA
Platform ID GPL7202
Series (1)
GSE23435 Gene expression data from AKT induced salivary gland tumors

Data table header descriptions
ID_REF Agilent Mouse Whole Genome 44k Probe Name
VALUE log2 normalized signal intensity

Data table
A_52_P616356 2.603484945
A_52_P580582 4.093791289
A_52_P403405 6.666528386
A_52_P819156 5.929838326
A_51_P331831 10.08145664
A_51_P430630 4.667341332
A_52_P502357 4.111704231
A_52_P299964 4.434547974
A_51_P356389 4.584443781
A_52_P684402 7.079529717
A_51_P414208 4.596371758
A_51_P280918 7.083264437
A_52_P613688 5.702287505
A_52_P258194 4.779799279
A_52_P229271 4.987204798
A_52_P214630 10.0208527
A_52_P579519 6.49937294
A_52_P979997 4.393896676
A_52_P453864 4.518957651
A_52_P655842 5.761621176

Total number of rows: 41174

Table truncated, full table size 994 Kbytes.

Supplementary file Size Download File type/resource
GSM575202_Lindvall_080110_SK_251486828277_S01_GE1_107_Sep09_1_4.txt.gz 7.9 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap