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Sample GSM575201 Query DataSets for GSM575201
Status Public on Jan 14, 2013
Title TUMOR_rap3
Sample type RNA
Source name Mus musculus
Organism Mus musculus
Characteristics subtype: TUMOR
treatment: rapamycin
days: 3
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label Agilent part #5190-0442 Quick-Amp Labeling kit 1-color.
Label protocol 300 ng of Qiagen-purified total RNA
Hybridization protocol Agilent hybridization protocol 65C 10rpm 17 h.
Scan protocol Agilent arrays were scanned using the Agilent Scanner G2565BA.
Description Gene expression data were obtained from normal tissue, untreated tumors, and tumors treated with rapamycin.
Data processing The data was first processed by background correction and then quantile normalization.
Submission date Aug 05, 2010
Last update date Jan 14, 2013
Contact name Karl Dykema
Organization name Van Andel Institute
Lab Lab of Computational Biology
Street address 333 Bostwick Ave. NE
City Grand Rapids
State/province MI
ZIP/Postal code 49503
Country USA
Platform ID GPL7202
Series (1)
GSE23435 Gene expression data from AKT induced salivary gland tumors

Data table header descriptions
ID_REF Agilent Mouse Whole Genome 44k Probe Name
VALUE log2 normalized signal intensity

Data table
A_52_P616356 2.864083527
A_52_P580582 3.260890223
A_52_P403405 4.1064377
A_52_P819156 4.671181673
A_51_P331831 7.648492686
A_51_P430630 3.143242233
A_52_P502357 2.674057175
A_52_P299964 3.302642993
A_51_P356389 3.95161252
A_52_P684402 7.794333046
A_51_P414208 4.914455422
A_51_P280918 7.338733313
A_52_P613688 5.930065604
A_52_P258194 7.974033682
A_52_P229271 4.056936441
A_52_P214630 9.670177727
A_52_P579519 7.614473851
A_52_P979997 3.457724036
A_52_P453864 2.940813954
A_52_P655842 3.870603682

Total number of rows: 41174

Table truncated, full table size 998 Kbytes.

Supplementary file Size Download File type/resource
GSM575201_Lindvall_080110_SK_251486828277_S01_GE1_107_Sep09_1_3.txt.gz 8.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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