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Sample GSM575200 Query DataSets for GSM575200
Status Public on Jan 14, 2013
Title NORMALSubmandibular
Sample type RNA
Source name Mus musculus
Organism Mus musculus
Characteristics subtype: Submandibular
treatment: none
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label Agilent part #5190-0442 Quick-Amp Labeling kit 1-color.
Label protocol 300 ng of Qiagen-purified total RNA
Hybridization protocol Agilent hybridization protocol 65C 10rpm 17 h.
Scan protocol Agilent arrays were scanned using the Agilent Scanner G2565BA.
Description Gene expression data were obtained from normal tissue, untreated tumors, and tumors treated with rapamycin.
Data processing The data was first processed by background correction and then quantile normalization.
Submission date Aug 05, 2010
Last update date Jan 14, 2013
Contact name Karl Dykema
Organization name Van Andel Institute
Lab Lab of Computational Biology
Street address 333 Bostwick Ave. NE
City Grand Rapids
State/province MI
ZIP/Postal code 49503
Country USA
Platform ID GPL7202
Series (1)
GSE23435 Gene expression data from AKT induced salivary gland tumors

Data table header descriptions
ID_REF Agilent Mouse Whole Genome 44k Probe Name
VALUE log2 normalized signal intensity

Data table
A_52_P616356 3.061257974
A_52_P580582 2.410310555
A_52_P403405 3.820543527
A_52_P819156 4.31786622
A_51_P331831 8.203632362
A_51_P430630 3.135487628
A_52_P502357 3.554560814
A_52_P299964 4.105178108
A_51_P356389 3.459920705
A_52_P684402 9.363035285
A_51_P414208 3.478183539
A_51_P280918 7.998007732
A_52_P613688 5.100491121
A_52_P258194 4.55880275
A_52_P229271 4.044353231
A_52_P214630 10.52223517
A_52_P579519 5.490540995
A_52_P979997 3.224614156
A_52_P453864 3.769730402
A_52_P655842 2.854089764

Total number of rows: 41174

Table truncated, full table size 998 Kbytes.

Supplementary file Size Download File type/resource
GSM575200_Lindvall_080110_SK_251486828277_S01_GE1_107_Sep09_1_2.txt.gz 8.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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