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Sample GSM575195 Query DataSets for GSM575195
Status Public on Jan 14, 2013
Title TUMOR_rap14
Sample type RNA
 
Source name Mus musculus
Organism Mus musculus
Characteristics subtype: TUMOR
treatment: rapamycin
days: 14
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label Agilent part #5190-0442 Quick-Amp Labeling kit 1-color.
Label protocol 300 ng of Qiagen-purified total RNA
 
Hybridization protocol Agilent hybridization protocol 65C 10rpm 17 h.
Scan protocol Agilent arrays were scanned using the Agilent Scanner G2565BA.
Description Gene expression data were obtained from normal tissue, untreated tumors, and tumors treated with rapamycin.
Data processing The data was first processed by background correction and then quantile normalization.
 
Submission date Aug 05, 2010
Last update date Jan 14, 2013
Contact name Karl Dykema
Organization name Van Andel Institute
Lab Lab of Computational Biology
Street address 333 Bostwick Ave. NE
City Grand Rapids
State/province MI
ZIP/Postal code 49503
Country USA
 
Platform ID GPL7202
Series (1)
GSE23435 Gene expression data from AKT induced salivary gland tumors

Data table header descriptions
ID_REF Agilent Mouse Whole Genome 44k Probe Name
VALUE log2 normalized signal intensity

Data table
ID_REF VALUE
A_52_P616356 4.537869438
A_52_P580582 4.538111372
A_52_P403405 6.80231041
A_52_P819156 6.269543765
A_51_P331831 10.01725781
A_51_P430630 3.671757467
A_52_P502357 3.178004581
A_52_P299964 4.297022116
A_51_P356389 4.143888384
A_52_P684402 6.782925015
A_51_P414208 3.855438525
A_51_P280918 7.129011139
A_52_P613688 5.333782458
A_52_P258194 5.207220761
A_52_P229271 6.206967619
A_52_P214630 10.54457455
A_52_P579519 6.862478243
A_52_P979997 5.373270768
A_52_P453864 4.079835996
A_52_P655842 5.631983068

Total number of rows: 41174

Table truncated, full table size 993 Kbytes.




Supplementary file Size Download File type/resource
GSM575195_Lindvall_080110_SK_251486828276_S01_GE1_107_Sep09_1_1.txt.gz 8.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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