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Sample GSM5728039 Query DataSets for GSM5728039
Status Public on Aug 05, 2023
Title Sample11.Common marmoset.203531420014_R05C02
Sample type genomic
 
Source name Blood
Organism Callithrix jacchus
Characteristics age: 1.69
confidenceinageestimate: 100
Sex: Male
treatment: None
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from tissues
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from tissue=Blood species=Common marmoset
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Dec 10, 2021
Last update date Aug 05, 2023
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (1)
GSE190663 Methylation studies in common marmoset

Supplementary file Size Download File type/resource
GSM5728039_203531420014_R05C02_Grn.idat.gz 374.9 Kb (ftp)(http) IDAT
GSM5728039_203531420014_R05C02_Red.idat.gz 381.3 Kb (ftp)(http) IDAT
Processed data are available on Series record

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