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Sample GSM5460351 Query DataSets for GSM5460351
Status Public on Sep 30, 2021
Title S1067__00019
Sample type RNA
 
Source name Breast cancer pre-treatment biopsy
Organism Homo sapiens
Characteristics tissue: Breast cancer
Treatment protocol All baseline samples were taken prior to any anti-cancer treatment
Extracted molecule total RNA
Extraction protocol Extraction of total RNA was carried out in accordance with standard SOPs
Label Biotin
Label protocol 3.5 µg biotinylated RNA was prepared using the NuGEN Encore Biotin Module
 
Hybridization protocol Following fragmentation, RNA was hybridised onto Affymetrix GeneChip arrays. GeneChips were washed and stained in the Affymetrix GeneChips fluidics stating 450
Scan protocol GeneChips were scanned using the Affymetrix Genechip Scanner 3000
Description Baseline diagnostic core biopsy
Gene expression data from breast cancer pre-treatment
Baseline tumour core biopsies were taken from breast cancers under ultrasound guidance
Data processing Microarray data was processed using the Robust Multi-array average method.
 
Submission date Jul 17, 2021
Last update date Sep 30, 2021
Contact name Stuart McIntosh
E-mail(s) s.mcintosh@qub.ac.uk
Organization name Queen's University Belfast
Lab Stuart McIntosh
Street address 97 Lisburn Road
City Belfast
ZIP/Postal code BT9 7AE
Country United Kingdom
 
Platform ID GPL30404
Series (1)
GSE180295 Array data from neoDDRD clinical trial

Supplementary file Size Download File type/resource
GSM5460351_S1067-00019.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data are available on Series record

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