|
Status |
Public on Apr 22, 2021 |
Title |
ATAC-seq from foreskin keratinocyte (ENCLB832JSY) |
Sample type |
SRA |
|
|
Source name |
Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days
|
Organism |
Homo sapiens |
Characteristics |
cell_type: foreskin keratinocyte biomaterial_type: primary cell description: Primary foreskin keratinocyte cells from a newborn healthy male donor, differentiated in 2D culture, day 3.0 biosample encode accession: ENCBS299ONK (SAMN18814276) Sex: male dev stage: newborn age: 2-4 day donor_id: ENCDO005EGE lab: Paul Khavari, Stanford source: Paul Khavari treatments: treatment_term_id: CHEBI:86158; treatment_term_name: calcium; treatment_type: chemical; duration: 2.5; duration_units: day; health state: Healthy passage number: 2 link: ENCBS299ONK at ENCODE; https://www.encodeproject.org/ENCBS299ONK/ link: Derived from ENCODE donor ENCDO005EGE; https://www.encodeproject.org/ENCDO005EGE/
|
Extracted molecule |
genomic DNA |
Extraction protocol |
general protocol: https://www.encodeproject.org/documents/6c6fb106-830f-4c72-83a9-634b7430f925/@@download/attachment/ggr.keratinocyte.greenleaf-lab.atac-seq.pdf
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|
|
Library strategy |
ATAC-seq |
Library source |
genomic |
Library selection |
other |
Instrument model |
Illumina HiSeq 4000 |
|
|
Description |
https://www.encodeproject.org/experiments/ENCSR245LNF/ *************** biological replicate number: 2 technical replicate number: 5 description: ATAC-seq on primary keratinocytes in day 3.0 of differentiation experiment encode accession: ENCSR245LNF assay title: ATAC-seq assembly: GRCh38 encode release date: 2017-10-10 lab: Will Greenleaf, Stanford library encode accession: ENCLB832JSY
|
Data processing |
See GSM*_README.txt supplementary file linked below
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|
|
Submission date |
Apr 21, 2021 |
Last update date |
Aug 03, 2021 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL20301 |
Series (1) |
GSE173056 |
ATAC-seq from foreskin keratinocyte (ENCSR245LNF) |
|
Relations |
Reanalyzed by |
GSE181392 |
BioSample |
SAMN18814276 |
SRA |
SRX10661216 |