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| Status |
Public on Mar 26, 2021 |
| Title |
UM2_3 [scRNA-seq] |
| Sample type |
SRA |
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| Source name |
Uveal Melanoma
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| Organism |
Homo sapiens |
| Characteristics |
tissue: Uveal Melanoma
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA from was extracted according to the Single Cell VDJ 5' Reagent kits.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
single cell RNA-seq
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| Data processing |
sample de-multiplexing and alignment was performed using Cell Ranger Single Cell Software Suite (v3.0.2)
Genome_build: GRCh38
Supplementary_files_format_and_content: Processed files are raw count UMI matrices which are given by Cellranger pipeline and Seurat objects with the RNA matrix in the RNA assay, and the TotalSeq information in the ADT assay.
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| Submission date |
Mar 25, 2021 |
| Last update date |
Mar 26, 2021 |
| Contact name |
Paul Gueguen |
| E-mail(s) |
paul.gueguen@unil.ch
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| Organization name |
Institut Curie
|
| Department |
Inserm U932
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| Street address |
26 rue D'Ulm
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| City |
Paris |
| ZIP/Postal code |
75005 |
| Country |
France |
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| Platform ID |
GPL24676 |
| Series (2) |
| GSE169609 |
Splicing patterns in SF3B1 mutated uveal melanoma generate shared immunogenic tumor-specific neo-epitopes [scRNA-seq] |
| GSE169610 |
Splicing patterns in SF3B1 mutated uveal melanoma generate shared immunogenic tumor-specific neo-epitopes |
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| Relations |
| BioSample |
SAMN18489963 |
| SRA |
SRX10442517 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM5210636_UM2_3.Rds.gz |
26.9 Mb |
(ftp)(http) |
RDS |
| GSM5210636_UM2_3_filtered_feature_bc_matrix.tar.gz |
38.2 Mb |
(ftp)(http) |
TAR |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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