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Sample GSM501503 Query DataSets for GSM501503
Status Public on Mar 01, 2010
Title Whole Blood DC355
Sample type genomic
 
Source name genomic DNA from whole blood DC355
Organism Homo sapiens
Characteristics source: bi-sulphite converted genomic whole blood DNA from Control
case/control: Control
ageatdiagnosis: 20
durationt1d: 19
sex: F
cohort: Belfast
sentrix_id: 4613664043
sentrix_position: E
bs conversion c1: Grn 4411
bs conversion c2: Grn 4380
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from whole blood of T1D patients using a salting out method
Label Biotin
Label protocol Standard Illumina Protocol for Infinium 27k Chip
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description whole blood from cases and controls, matched for age and sex, were drawn from two irish cohorts. Three replicates labeled with an r are included.
Data processing BeadStudio software v3.2
 
Submission date Jan 27, 2010
Last update date Mar 01, 2010
Contact name Andrew E Teschendorff
E-mail(s) a.teschendorff@ucl.ac.uk
Phone +44 02076790727
Organization name University College London
Department UCL Cancer Institute/Institute for Women's Health
Street address 72 Huntley Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
 
Platform ID GPL8490
Series (1)
GSE20067 Genome wide DNA methylation profiling of diabetic nephropathy in type 1 diabetes mellitus

Data table header descriptions
ID_REF IlmnID
VALUE M/(U+M+100)

Data table
ID_REF VALUE
cg00000292 0.819
cg00002426 0.7740793
cg00003994 0.170339
cg00005847 0.2302968
cg00006414 0.1893491
cg00007981 0.06842312
cg00008493 0.9428968
cg00008713 0.04194138
cg00009407 0.1400294
cg00010193 0.6218338
cg00011459 0.5937107
cg00012199 0.06239628
cg00012386 0.04060449
cg00012792 0.02672804
cg00013618 0.7594502
cg00014085 0.1198027
cg00014837 0.7173423
cg00015770 0.1289617
cg00016968 0.8471633
cg00019495 0.4709018

Total number of rows: 27578

Table truncated, full table size 571 Kbytes.




Supplementary file Size Download File type/resource
GSM501503.txt.gz 489.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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