NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM501501 Query DataSets for GSM501501
Status Public on Mar 01, 2010
Title Whole Blood DC240
Sample type genomic
 
Source name genomic DNA from whole blood DC240
Organism Homo sapiens
Characteristics source: bi-sulphite converted genomic whole blood DNA from Control
case/control: Control
ageatdiagnosis: 10
durationt1d: 30
sex: F
cohort: Belfast
sentrix_id: 4613664043
sentrix_position: C
bs conversion c1: Grn 5830
bs conversion c2: Grn 5631
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from whole blood of T1D patients using a salting out method
Label Biotin
Label protocol Standard Illumina Protocol for Infinium 27k Chip
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description whole blood from cases and controls, matched for age and sex, were drawn from two irish cohorts. Three replicates labeled with an r are included.
Data processing BeadStudio software v3.2
 
Submission date Jan 27, 2010
Last update date Mar 01, 2010
Contact name Andrew E Teschendorff
E-mail(s) a.teschendorff@ucl.ac.uk
Phone +44 02076790727
Organization name University College London
Department UCL Cancer Institute/Institute for Women's Health
Street address 72 Huntley Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
 
Platform ID GPL8490
Series (1)
GSE20067 Genome wide DNA methylation profiling of diabetic nephropathy in type 1 diabetes mellitus

Data table header descriptions
ID_REF IlmnID
VALUE M/(U+M+100)

Data table
ID_REF VALUE
cg00000292 0.8522336
cg00002426 0.8236727
cg00003994 0.193007
cg00005847 0.1736043
cg00006414 0.1769448
cg00007981 0.05259698
cg00008493 0.9459545
cg00008713 0.03959877
cg00009407 0.1208448
cg00010193 0.6606622
cg00011459 0.7863882
cg00012199 0.04603541
cg00012386 0.02362107
cg00012792 0.03548336
cg00013618 0.7851462
cg00014085 0.0999845
cg00014837 0.7420604
cg00015770 0.1458699
cg00016968 0.8750632
cg00019495 0.351463

Total number of rows: 27578

Table truncated, full table size 572 Kbytes.




Supplementary file Size Download File type/resource
GSM501501.txt.gz 489.4 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap