|
Status |
Public on Mar 01, 2010 |
Title |
Whole Blood DDC129 |
Sample type |
genomic |
|
|
Source name |
genomic DNA from whole blood DDC129
|
Organism |
Homo sapiens |
Characteristics |
source: bi-sulphite converted genomic whole blood DNA from Control case/control: Control ageatdiagnosis: 13 durationt1d: 31 sex: M cohort: Dublin sentrix_id: 4613664023 sentrix_position: C bs conversion c1: Grn 3880 bs conversion c2: Grn 3683
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was extracted from whole blood of T1D patients using a salting out method
|
Label |
Biotin
|
Label protocol |
Standard Illumina Protocol for Infinium 27k Chip
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
whole blood from cases and controls, matched for age and sex, were drawn from two irish cohorts. Three replicates labeled with an r are included.
|
Data processing |
BeadStudio software v3.2
|
|
|
Submission date |
Jan 27, 2010 |
Last update date |
Mar 01, 2010 |
Contact name |
Andrew E Teschendorff |
E-mail(s) |
a.teschendorff@ucl.ac.uk
|
Phone |
+44 02076790727
|
Organization name |
University College London
|
Department |
UCL Cancer Institute/Institute for Women's Health
|
Street address |
72 Huntley Street
|
City |
London |
ZIP/Postal code |
WC1E 6BT |
Country |
United Kingdom |
|
|
Platform ID |
GPL8490 |
Series (1) |
GSE20067 |
Genome wide DNA methylation profiling of diabetic nephropathy in type 1 diabetes mellitus |
|