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Sample GSM501489 Query DataSets for GSM501489
Status Public on Mar 01, 2010
Title Whole Blood DDC129
Sample type genomic
 
Source name genomic DNA from whole blood DDC129
Organism Homo sapiens
Characteristics source: bi-sulphite converted genomic whole blood DNA from Control
case/control: Control
ageatdiagnosis: 13
durationt1d: 31
sex: M
cohort: Dublin
sentrix_id: 4613664023
sentrix_position: C
bs conversion c1: Grn 3880
bs conversion c2: Grn 3683
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from whole blood of T1D patients using a salting out method
Label Biotin
Label protocol Standard Illumina Protocol for Infinium 27k Chip
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description whole blood from cases and controls, matched for age and sex, were drawn from two irish cohorts. Three replicates labeled with an r are included.
Data processing BeadStudio software v3.2
 
Submission date Jan 27, 2010
Last update date Mar 01, 2010
Contact name Andrew E Teschendorff
E-mail(s) a.teschendorff@ucl.ac.uk
Phone +44 02076790727
Organization name University College London
Department UCL Cancer Institute/Institute for Women's Health
Street address 72 Huntley Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
 
Platform ID GPL8490
Series (1)
GSE20067 Genome wide DNA methylation profiling of diabetic nephropathy in type 1 diabetes mellitus

Data table header descriptions
ID_REF IlmnID
VALUE M/(U+M+100)

Data table
ID_REF VALUE
cg00000292 0.7086142
cg00002426 0.8224734
cg00003994 0.2
cg00005847 0.2127822
cg00006414 0.1997292
cg00007981 0.06759546
cg00008493 0.9614012
cg00008713 0.03953338
cg00009407 0.1151924
cg00010193 0.6343441
cg00011459 0.6117805
cg00012199 0.04334998
cg00012386 0.0261194
cg00012792 0.02893025
cg00013618 0.7189139
cg00014085 0.08307927
cg00014837 0.7158949
cg00015770 0.1548629
cg00016968 0.8329473
cg00019495 0.3216413

Total number of rows: 27578

Table truncated, full table size 572 Kbytes.




Supplementary file Size Download File type/resource
GSM501489.txt.gz 493.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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