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Sample GSM501324 Query DataSets for GSM501324
Status Public on Jan 23, 2011
Title HFD_BALB/cByJ_276
Sample type RNA
 
Channel 1
Source name liver sample from BALB/cByJ, HFD
Organism Mus musculus
Characteristics strain: DBA/2J
tissue: liver
diet: high fat diet
Treatment protocol A high-fat diet or EtOH-containing high-fat diet was administered via gastric tube for 28 days.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using an RNeasy plus mini kit (Qiagen, Valencia, CA).
Label Cy5
Label protocol 2.0 ug of total RNA from each sample, or 2.5 ug from mouse reference RNA (Icoria, Inc., RTP, NC), was labeled with fluorescent dye (Cy5 and Cy3, respectively).
 
Channel 2
Source name mouse liver RNA (reference)
Organism Mus musculus
Characteristics tissue: liver
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using an RNeasy plus mini kit (Qiagen, Valencia, CA).
Label Cy3
Label protocol 2.0 ug of total RNA from each sample, or 2.5 ug from mouse reference RNA (Icoria, Inc., RTP, NC), was labeled with fluorescent dye (Cy5 and Cy3, respectively).
 
 
Hybridization protocol Labeled samples and reference were hybridized to the microarray at 65 degrees for 17 hours and washed with washing solutions.
Scan protocol Arrays were scanned with Agilent Microarray Scanner (Agilent), and the obtained images were analyzed with Agilent Feature Extraction software (v8.5, Agilent Technologies).
Description Batch5
276
Data processing Normalization and filtering were performed with UNC Microarray Database (https://genome.unc.edu/). Inter-batch normalization was carried out using the ComBat procedure.
 
Submission date Jan 26, 2010
Last update date Jan 23, 2011
Contact name Ivan Rusyn
E-mail(s) iir@unc.edu
Phone 919-843-2596
Fax 919-843-2596
URL http://cancer.unc.edu/research/faculty/displayMember.asp?ID=398
Organization name University of North Carolina
Department Gillings School of Global Public Health
Lab Environmental Genomics Lab
Street address 0031 Michael Hooker Research Center
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7431
Country USA
 
Platform ID GPL7202
Series (1)
GSE20052 Gene expression in the liver of ethanol-treated mice via gastric tube in multiple strains

Data table header descriptions
ID_REF
VALUE Lowess-normalized log2 ratio (sample/reference)

Data table
ID_REF VALUE
A_51_P100063 0.227270792
A_51_P100099 -0.049143158
A_51_P100155 -0.07630354
A_51_P100174 -0.151322288
A_51_P100181 0.064957187
A_51_P100227 -0.053615341
A_51_P100246 -0.204758206
A_51_P100289 0.019229198
A_51_P100327 -0.044080133
A_51_P100505 -0.475561354
A_51_P100565 0.018566506
A_51_P100573 0.038516002
A_51_P100625 0.238823397
A_51_P100787 -0.03213675
A_51_P100828 -0.047040138
A_51_P100852 -0.468674583
A_51_P100856 0.290896626
A_51_P100866 -0.002743742
A_51_P100991 0.886764625
A_51_P101086 -0.103190632

Total number of rows: 18833

Table truncated, full table size 465 Kbytes.




Supplementary file Size Download File type/resource
GSM501324.txt.gz 14.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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