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Sample GSM49941 Query DataSets for GSM49941
Status Public on Jul 29, 2005
Title NB4 CONTROL 3
Sample type RNA
 
Source name NB4 PROMYELOCYTIC CELLS
Organism Homo sapiens
Extracted molecule total RNA
 
Description We used the Human Genome U133 Plus 2.0 Array (Affymetrix) containing 54,675 probe sets to determine global impacts of A. phagocytophilum infection in NB4 cells at four hours post-infection. The mRNA was isolated using the TRI reagent extraction protocol (Molecular Research Center, Cincinnati) followed by RNeasy cleanup. cRNA production, labeling reactions, hybridization, staining and washing were performed according to the Gene Chip Expression Analysis Technical Manual (Affymetrix, Santa Clara) at the W.M. Keck Facility (Yale University). Image data were quantified by using genechip/suite microarray suite 5.0 (MAS 5.0) and default parameters were used for identification of informative probes.
 
Submission date Apr 29, 2005
Last update date Aug 28, 2018
Contact name Joao Helbert Pedra
E-mail(s) joao.pedra@yale.edu
Phone 203-737-5635
Fax 203-785-7053
Organization name Yale University School of Medicine
Department Internal Medicine/ Rheumatology
Lab Fikrig
Street address 300 Cedar Street - TAC S-410
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platform ID GPL570
Series (1)
GSE2600 Anaplasma phagocytophilum infected NB4 cells
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 702 P 0.000754
AFFX-BioB-M_at 825 P 0.000044
AFFX-BioB-3_at 546.1 P 0.000662
AFFX-BioC-5_at 1868.3 P 0.000052
AFFX-BioC-3_at 2456.3 P 0.000052
AFFX-BioDn-5_at 4210.7 P 0.000044
AFFX-BioDn-3_at 9346.9 P 0.000052
AFFX-CreX-5_at 17801.4 P 0.000052
AFFX-CreX-3_at 23737.3 P 0.000044
AFFX-DapX-5_at 33.7 A 0.313708
AFFX-DapX-M_at 44.8 A 0.455413
AFFX-DapX-3_at 6.3 A 0.963431
AFFX-LysX-5_at 25.7 A 0.470241
AFFX-LysX-M_at 31.1 A 0.52976
AFFX-LysX-3_at 64.8 A 0.165861
AFFX-PheX-5_at 4.8 A 0.672921
AFFX-PheX-M_at 27.1 A 0.588627
AFFX-PheX-3_at 54.6 A 0.368438
AFFX-ThrX-5_at 30.6 A 0.411373
AFFX-ThrX-M_at 9.3 A 0.617411

Total number of rows: 54675

Table truncated, full table size 1437 Kbytes.




Supplementary file Size Download File type/resource
GSM49941.CEL.gz 7.9 Mb (ftp)(http) CEL

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