|
| Status |
Public on Aug 10, 2021 |
| Title |
tg(sox10:GFP) |
| Sample type |
SRA |
| |
|
| Source name |
zebrafish trunk tg(sox10:GFP) positive cells
|
| Organism |
Danio rerio |
| Characteristics |
genotype: tg(sox10:GFP)-ba2
tissue: trunk neural crest cells
developmental stage: 24 hpf
|
| Extracted molecule |
total RNA |
| Extraction protocol |
tg(sox10:GFP) cells were isolated by FACS from dissociated trunks of 20-24hpf zebrafish and submitted to 10x Sequencing
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
trunk tg(sox10:GFP) cells from 20-24hpf zebrafish
|
| Data processing |
cellranger v3.2
seurat v3.2.2
Genome_build: GRCz11
Supplementary_files_format_and_content: features, barcodes, counts matrix for scRNAseq
Supplementary_files_format_and_content: Cluster assignments
|
| |
|
| Submission date |
Dec 28, 2020 |
| Last update date |
Aug 10, 2021 |
| Contact name |
Ezra Lencer |
| E-mail(s) |
lencere@lafayette.edu
|
| Organization name |
Lafayette College
|
| Department |
Department of Biology
|
| Lab |
Lencer Laboratory
|
| Street address |
746 High Street
|
| City |
Easton |
| State/province |
PA |
| ZIP/Postal code |
18042 |
| Country |
USA |
| |
|
| Platform ID |
GPL24995 |
| Series (1) |
| GSE163907 |
Single cell RNA analysis of trunk neural crest cells in zebrafish |
|
| Relations |
| BioSample |
SAMN17169818 |
| SRA |
SRX9739651 |
