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Sample GSM497398 Query DataSets for GSM497398
Status Public on Jan 16, 2010
Title Liver rosiglitazone 280µmol/kg biological replicate 6
Sample type RNA
 
Channel 1
Source name Pool of db/db control mice
Organism Mus musculus
Characteristics tissue: Liver
strain: BKS Cg-m+/+ Leprdb/J
Treatment protocol Per os treatment for 18 days
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Trizol following manufacturer's instructions
Label Cy3,Cy5
Label protocol Total RNA samples were labelled using Agilent low RNA input linear amplification Kit, according to the manufacturer's protocols. 500ng of liver and IAT total RNA were reversed transcribed by MMLV reverse transcriptase. Amplification and labelling were done by T7-polymerase transcription. Test and reference cRNA were labelled with cyanine Cy5 or Cy3-CTP dyes.
 
Channel 2
Source name db/db mouse treated with 280µmol/kg of rosiglitazone
Organism Mus musculus
Characteristics tissue: Liver
strain: BKS Cg-m+/+ Leprdb/J
Treatment protocol Per os treatment for 18 days
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Trizol following manufacturer's instructions
Label Cy5,Cy3
Label protocol Total RNA samples were labelled using Agilent low RNA input linear amplification Kit, according to the manufacturer's protocols. 500ng of liver and IAT total RNA were reversed transcribed by MMLV reverse transcriptase. Amplification and labelling were done by T7-polymerase transcription. Test and reference cRNA were labelled with cyanine Cy5 or Cy3-CTP dyes.
 
 
Hybridization protocol Samples were incubated at 60°C for 30 minutes and then hybridized for 17 hours at 65°C in a 10 rpm rotary oven. Slides were then washed in buffer 1 and 2, according to manufacturer’s specification.
Scan protocol Scanned on an Agilent G2505B scanner.
Images were quantified using Agilent Feature Extraction Software (version 9.5).
Description Analysis used the pool of db/db mice as control samples for comparison to the treated mice.Biological replicate 6 of 6. Db/db mice treated with 280µmol/kg of rosiglitazone
Data processing Agilent Feature Extraction Software (v 9.5) was used for background subtraction and LOWESS normalization (GE2-v5_95_Feb07 protocol). Rosetta Resolver (v 7.1) was used for the dye-swap combination.
 
Submission date Jan 14, 2010
Last update date Jan 15, 2010
Contact name Aurélie Cotillard
Organization name Institut de Recherches Servier
Street address 125 chemin de ronde
City Croissy-sur-Seine
ZIP/Postal code 78290
Country France
 
Platform ID GPL7202
Series (1)
GSE19896 Diabetic db/db mice treated with three doses of rosiglitazone and S compound

Data table header descriptions
ID_REF
VALUE LOWESS normalized log ratio (experiment/control)

Data table
ID_REF VALUE
A_51_P362483 -0.098583
A_51_P199927 -0.048187
A_51_P353539 -0.193036
A_51_P386899 -0.050549
A_51_P428364 0.067097
A_51_P467268 0
A_51_P428360 0
A_51_P411345 -0.157584
A_51_P175871 0.042426
A_51_P373428 0.181823
A_51_P139641 -0.014045
A_51_P373424 0
A_51_P504902 -0.171928
A_51_P397834 -0.143633
A_51_P366811 0.149398
A_51_P407304 -0.192958
A_51_P454707 -0.039911
A_51_P353502 -0.052175
A_51_P405496 0
A_51_P504503 0.002705

Total number of rows: 41174

Table truncated, full table size 843 Kbytes.




Supplementary file Size Download File type/resource
GSM497398_Liver_Rosi280_6_Cy3_ref_Cy5_test.txt.gz 14.3 Mb (ftp)(http) TXT
GSM497398_Liver_Rosi280_6_Cy3_test_Cy5_ref.txt.gz 14.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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