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Sample GSM4969770 Query DataSets for GSM4969770
Status Public on Dec 26, 2020
Title 200517480077_R04C01
Sample type genomic
 
Source name Liver tissue
Organism Homo sapiens
Characteristics tissue: liver
gender: female
bmi: 23
ecocardio: Positive
age, etiology, meld: 61, Alcohol, 10
fvc: 85
fev1: 96
fev1/fvc: 87
dlco_va: 57
disease state: HPS
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver blocks with the Recover All kit following the instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC 850K using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description DNA from PF block
Meld = Model for End-stage Liver Disease
Data processing BeadStudio software v3.2
 
Submission date Dec 10, 2020
Last update date Dec 28, 2020
Contact name Nuria Mendoza
E-mail(s) nmendoza@clinic.cat
Organization name IDIBAPS
Lab 606
Street address C/Casanova 143, cellex 2 A
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL21145
Series (1)
GSE162984 EPIC-HPS

Data table header descriptions
ID_REF
VALUE M values

Data table
ID_REF VALUE
cg14817997 2.083672416
cg14008030 1.651187597
cg02404219 1.451143352
cg03130891 -1.108529171
cg16382250 2.223874466
cg24335620 1.219855235
cg24669183 1.511010134
cg17308840 -1.132355908
cg17866181 2.866862737
cg08477687 -2.038064068
cg00645010 -3.242531966
cg27534567 -2.72063883
cg01070250 -3.219105867
cg24063007 -5.181886394
cg11380914 1.455901388
cg10692041 1.991980233
cg02339369 2.572737527
cg16535257 0.273850319
cg15979415 0.788998756
cg11304639 -1.423352933

Total number of rows: 461189

Table truncated, full table size 10486 Kbytes.




Supplementary file Size Download File type/resource
GSM4969770_200517480077_R04C01_Grn.idat.gz 6.9 Mb (ftp)(http) IDAT
GSM4969770_200517480077_R04C01_Red.idat.gz 7.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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