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Status |
Public on Dec 26, 2020 |
Title |
200517480077_R04C01 |
Sample type |
genomic |
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Source name |
Liver tissue
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Organism |
Homo sapiens |
Characteristics |
tissue: liver gender: female bmi: 23 ecocardio: Positive age, etiology, meld: 61, Alcohol, 10 fvc: 85 fev1: 96 fev1/fvc: 87 dlco_va: 57 disease state: HPS
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Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from liver blocks with the Recover All kit following the instructions
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Label |
Cy5 and Cy3
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Label protocol |
Standard Illumina Protocol
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Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC 850K using standard Illumina protocol
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Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
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Description |
DNA from PF block Meld = Model for End-stage Liver Disease
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Data processing |
BeadStudio software v3.2
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Submission date |
Dec 10, 2020 |
Last update date |
Dec 28, 2020 |
Contact name |
Nuria Mendoza |
E-mail(s) |
nmendoza@clinic.cat
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Organization name |
IDIBAPS
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Lab |
606
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Street address |
C/Casanova 143, cellex 2 A
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City |
Barcelona |
ZIP/Postal code |
08036 |
Country |
Spain |
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Platform ID |
GPL21145 |
Series (1) |
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Data table header descriptions |
ID_REF |
|
VALUE |
M values |
Data table |
ID_REF |
VALUE |
cg14817997 |
2.083672416 |
cg14008030 |
1.651187597 |
cg02404219 |
1.451143352 |
cg03130891 |
-1.108529171 |
cg16382250 |
2.223874466 |
cg24335620 |
1.219855235 |
cg24669183 |
1.511010134 |
cg17308840 |
-1.132355908 |
cg17866181 |
2.866862737 |
cg08477687 |
-2.038064068 |
cg00645010 |
-3.242531966 |
cg27534567 |
-2.72063883 |
cg01070250 |
-3.219105867 |
cg24063007 |
-5.181886394 |
cg11380914 |
1.455901388 |
cg10692041 |
1.991980233 |
cg02339369 |
2.572737527 |
cg16535257 |
0.273850319 |
cg15979415 |
0.788998756 |
cg11304639 |
-1.423352933 |
Total number of rows: 461189
Table truncated, full table size 10486 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM4969770_200517480077_R04C01_Grn.idat.gz |
6.9 Mb |
(ftp)(http) |
IDAT |
GSM4969770_200517480077_R04C01_Red.idat.gz |
7.0 Mb |
(ftp)(http) |
IDAT |
Processed data included within Sample table |
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