NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4969766 Query DataSets for GSM4969766
Status Public on Dec 26, 2020
Title 200517480058_R07C01
Sample type genomic
 
Source name Liver tissue
Organism Homo sapiens
Characteristics tissue: liver
gender: female
bmi: 25
ecocardio: Positive
age, etiology, meld: 45, HCV, 11
fvc: 99
fev1: 98
fev1/fvc: 80
dlco_va: 43
disease state: HPS
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver blocks with the Recover All kit following the instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC 850K using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description DNA from PF block
Meld = Model for End-stage Liver Disease
Data processing BeadStudio software v3.2
 
Submission date Dec 10, 2020
Last update date Dec 28, 2020
Contact name Nuria Mendoza
E-mail(s) nmendoza@clinic.cat
Organization name IDIBAPS
Lab 606
Street address C/Casanova 143, cellex 2 A
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL21145
Series (1)
GSE162984 EPIC-HPS

Data table header descriptions
ID_REF
VALUE M values

Data table
ID_REF VALUE
cg14817997 2.543430084
cg14008030 1.352379857
cg02404219 1.063298319
cg03130891 -1.359712983
cg16382250 2.905965327
cg24335620 0.738054559
cg24669183 0.215669671
cg17308840 -1.441912954
cg17866181 2.322226329
cg08477687 -2.465244964
cg00645010 -2.905867739
cg27534567 -3.236960824
cg01070250 -2.482600619
cg24063007 -4.212506227
cg11380914 0.048594223
cg10692041 1.557393921
cg02339369 0.631690152
cg16535257 -0.236075151
cg15979415 0.200631135
cg11304639 -1.549150785

Total number of rows: 461189

Table truncated, full table size 10480 Kbytes.




Supplementary file Size Download File type/resource
GSM4969766_200517480058_R07C01_Grn.idat.gz 6.9 Mb (ftp)(http) IDAT
GSM4969766_200517480058_R07C01_Red.idat.gz 7.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap