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Status |
Public on Dec 26, 2020 |
Title |
200517480058_R07C01 |
Sample type |
genomic |
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Source name |
Liver tissue
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Organism |
Homo sapiens |
Characteristics |
tissue: liver gender: female bmi: 25 ecocardio: Positive age, etiology, meld: 45, HCV, 11 fvc: 99 fev1: 98 fev1/fvc: 80 dlco_va: 43 disease state: HPS
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Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from liver blocks with the Recover All kit following the instructions
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Label |
Cy5 and Cy3
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Label protocol |
Standard Illumina Protocol
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Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC 850K using standard Illumina protocol
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Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
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Description |
DNA from PF block Meld = Model for End-stage Liver Disease
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Data processing |
BeadStudio software v3.2
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Submission date |
Dec 10, 2020 |
Last update date |
Dec 28, 2020 |
Contact name |
Nuria Mendoza |
E-mail(s) |
nmendoza@clinic.cat
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Organization name |
IDIBAPS
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Lab |
606
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Street address |
C/Casanova 143, cellex 2 A
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City |
Barcelona |
ZIP/Postal code |
08036 |
Country |
Spain |
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Platform ID |
GPL21145 |
Series (1) |
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Data table header descriptions |
ID_REF |
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VALUE |
M values |
Data table |
ID_REF |
VALUE |
cg14817997 |
2.543430084 |
cg14008030 |
1.352379857 |
cg02404219 |
1.063298319 |
cg03130891 |
-1.359712983 |
cg16382250 |
2.905965327 |
cg24335620 |
0.738054559 |
cg24669183 |
0.215669671 |
cg17308840 |
-1.441912954 |
cg17866181 |
2.322226329 |
cg08477687 |
-2.465244964 |
cg00645010 |
-2.905867739 |
cg27534567 |
-3.236960824 |
cg01070250 |
-2.482600619 |
cg24063007 |
-4.212506227 |
cg11380914 |
0.048594223 |
cg10692041 |
1.557393921 |
cg02339369 |
0.631690152 |
cg16535257 |
-0.236075151 |
cg15979415 |
0.200631135 |
cg11304639 |
-1.549150785 |
Total number of rows: 461189
Table truncated, full table size 10480 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM4969766_200517480058_R07C01_Grn.idat.gz |
6.9 Mb |
(ftp)(http) |
IDAT |
GSM4969766_200517480058_R07C01_Red.idat.gz |
7.0 Mb |
(ftp)(http) |
IDAT |
Processed data included within Sample table |
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