NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4969765 Query DataSets for GSM4969765
Status Public on Dec 26, 2020
Title 200517480058_R06C01
Sample type genomic
 
Source name Liver tissue
Organism Homo sapiens
Characteristics tissue: liver
gender: male
bmi: 26
ecocardio: No eco
age, etiology, meld: 55, HBV, 13
fvc: 115
fev1: 104
fev1/fvc: 70
dlco_va: 85
disease state: Control
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver blocks with the Recover All kit following the instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human EPIC 850K using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description DNA from PF block
Meld = Model for End-stage Liver Disease
Data processing BeadStudio software v3.2
 
Submission date Dec 10, 2020
Last update date Dec 28, 2020
Contact name Nuria Mendoza
E-mail(s) nmendoza@clinic.cat
Organization name IDIBAPS
Lab 606
Street address C/Casanova 143, cellex 2 A
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL21145
Series (1)
GSE162984 EPIC-HPS

Data table header descriptions
ID_REF
VALUE M values

Data table
ID_REF VALUE
cg14817997 2.252646955
cg14008030 1.419755716
cg02404219 1.61072973
cg03130891 -3.725669202
cg16382250 2.312043845
cg24335620 1.790595719
cg24669183 2.246308175
cg17308840 -1.056847703
cg17866181 2.236551883
cg08477687 -2.679887379
cg00645010 -3.180244432
cg27534567 -3.215163634
cg01070250 -3.299474338
cg24063007 -4.335548529
cg11380914 0.92782864
cg10692041 2.138544434
cg02339369 0.802749293
cg16535257 0.282941469
cg15979415 0.989085333
cg11304639 -1.964946919

Total number of rows: 461189

Table truncated, full table size 10494 Kbytes.




Supplementary file Size Download File type/resource
GSM4969765_200517480058_R06C01_Grn.idat.gz 7.0 Mb (ftp)(http) IDAT
GSM4969765_200517480058_R06C01_Red.idat.gz 7.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap