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Sample GSM4952712 Query DataSets for GSM4952712
Status Public on Jan 01, 2023
Title FUUR1-RNAPol2
Sample type SRA
 
Source name human ASPS cell line
Organism Homo sapiens
Characteristics chip antibody: POLII
cell line: FU-UR-1
Extracted molecule genomic DNA
Extraction protocol Lysates were clarified from sonicated nuclei and TARGET DNA complexes were isolated with antibody.
Library was prepared using NEBnext ChIP-seq libraray prep reagent set
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina MiSeq
 
Data processing single 50bp sequencing on an Illumina MiSeq platform
ChIP-seq reads were aligned to the hg38 genome assembly using bowtie2 Version 2.3.4.2
peaks were called using MACS2 with following settings: -B --SPMR --pvalue=1e-2 --mfold 15 100
Genome_build: hg38
Supplementary_files_format_and_content: bigwig files were generated using multirep_macs2_pipeline.pl; Scores represent a normalized pileup signal
 
Submission date Dec 02, 2020
Last update date Jan 01, 2023
Contact name Jinxiu Li
Organization name China Agricutural University
Department College of biological sciences
Lab State key laboratories of Agrobiotechnology
Street address Yuanmingyuan west road 2#
City Beijing
State/province Beijing
ZIP/Postal code 100193
Country China
 
Platform ID GPL15520
Series (2)
GSE162481 ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [Cell_lines_ChIP, FUUR1, FUUR1_ASPL_POLII]
GSE162609 ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP
Relations
BioSample SAMN16977115
SRA SRX9618637

Supplementary file Size Download File type/resource
GSM4952712_FUUR1_1_RNApol2.bw 205.0 Mb (ftp)(http) BW
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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