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Sample GSM4933107 Query DataSets for GSM4933107
Status Public on Jan 27, 2021
Title scRNAseq of Blood memory CD8+ T-cells from HUP222
Sample type SRA
 
Source name lymphocytes
Organism Homo sapiens
Characteristics tissue: Blood
disease state: HIVneg
cell type: Memory CD8+ T-cells
antigen-specificity: N/A
Extracted molecule total RNA
Extraction protocol Chromium Single-cell VDJ v1.1 kit (10X Genomics)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing basecalling and demultiplexing with cellranger/v4.0.0 mkfastq with bcl2fastq2/v2.20.0.422
generating barcode/feature matrices with cellranger/v4.0.0 count
generating clonotype data with cellranger/v4.0.0 vdj
Genome_build: hg38
Supplementary_files_format_and_content: cellranger count filtered output
 
Submission date Nov 24, 2020
Last update date Jan 27, 2021
Contact name Marcus Buggert
E-mail(s) marcus.buggert@ki.se
Organization name Karolinska Institutet
Department Microbiology
Street address C2:94; Karolinska Universitetssjukhuset Huddinge
City Stockholm
State/province PA
ZIP/Postal code 141 86
Country Sweden
 
Platform ID GPL24676
Series (2)
GSE162097 The identity of human tissue-emigrant CD8+ T cells (scRNAseq, scTCRseq, bulk RNA-seq)
GSE162180 The identity of human tissue-emigrant CD8+ T cells
Relations
BioSample SAMN16883152
SRA SRX9568864

Supplementary file Size Download File type/resource
GSM4933107_HUP222_Blood_filtered_feature_bc_matrix.tar.gz 16.1 Mb (ftp)(http) TAR
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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