|
Status |
Public on Jan 27, 2021 |
Title |
scRNAseq of Blood memory CD8+ T-cells from HUP222 |
Sample type |
SRA |
|
|
Source name |
lymphocytes
|
Organism |
Homo sapiens |
Characteristics |
tissue: Blood disease state: HIVneg cell type: Memory CD8+ T-cells antigen-specificity: N/A
|
Extracted molecule |
total RNA |
Extraction protocol |
Chromium Single-cell VDJ v1.1 kit (10X Genomics)
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
basecalling and demultiplexing with cellranger/v4.0.0 mkfastq with bcl2fastq2/v2.20.0.422 generating barcode/feature matrices with cellranger/v4.0.0 count generating clonotype data with cellranger/v4.0.0 vdj Genome_build: hg38 Supplementary_files_format_and_content: cellranger count filtered output
|
|
|
Submission date |
Nov 24, 2020 |
Last update date |
Jan 27, 2021 |
Contact name |
Marcus Buggert |
E-mail(s) |
marcus.buggert@ki.se
|
Organization name |
Karolinska Institutet
|
Department |
Microbiology
|
Street address |
C2:94; Karolinska Universitetssjukhuset Huddinge
|
City |
Stockholm |
State/province |
PA |
ZIP/Postal code |
141 86 |
Country |
Sweden |
|
|
Platform ID |
GPL24676 |
Series (2) |
GSE162097 |
The identity of human tissue-emigrant CD8+ T cells (scRNAseq, scTCRseq, bulk RNA-seq) |
GSE162180 |
The identity of human tissue-emigrant CD8+ T cells |
|
Relations |
BioSample |
SAMN16883152 |
SRA |
SRX9568864 |