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Sample GSM4904363 Query DataSets for GSM4904363
Status Public on Jan 27, 2021
Title Brain, young, CD13+
Sample type SRA
Source name Whole brain
Organism Mus musculus
Characteristics cell type: Mural cells
age: 2 months
strain: C57BL/6J
gender: male
tissue: Whole brain
Extracted molecule total RNA
Extraction protocol 10x Genomics Chromium single-cell preparation
NGS Illumina Next Seq
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
Description RNA was isolated from the brains of 10 mice.
Data processing Illumina bcl2fastq software used for basecalling
UMI count matrices generated using the Cellranger count pipeline 4.0.0. The output from the cellranger count pipeline for each sample has been uploaded as a folder containing count, barcode, and gene matrices.
Genome_build: mm10
Supplementary_files_format_and_content: Compressed folders containing the raw UMI count matrices for each sample, as well as matrices with gene symbols and barcodes.
Submission date Nov 11, 2020
Last update date Jan 27, 2021
Contact name Jonathan Kipnis
Organization name Washington University in Saint Louis
Department Pathology and Immunology
Lab Kipnis Lab
Street address 4515 McKinley Ave
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL24247
Series (2)
GSE144174 Cellular and molecular characterization of the dural sinuses as a neuroimmune interface [vasculature]
GSE144175 Cellular and molecular characterization of the dural sinuses as a neuroimmune interface
BioSample SAMN16770644
SRA SRX9486495

Supplementary file Size Download File type/resource
GSM4904363_BY_CD13.tar.gz 5.7 Mb (ftp)(http) TAR
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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