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Sample GSM4890877 Query DataSets for GSM4890877
Status Public on Dec 21, 2020
Title WT_5_post_S9_R1_001.fastq.gz
Sample type SRA
 
Source name Sorted T cells
Organism Mus musculus
Characteristics cell type: Sorted T cells
time point: Post transfer
genotype: WT
strain: BALB/c
Growth protocol Sorted from fresh spleen
Extracted molecule polyA RNA
Extraction protocol RNeasy Mini (Qiagen)
Illumina TruSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description WT-5-post_S9
Data processing Quantitation of transcripts against the mm9 reference genome was performed in Partek Flow (Partek Inc.) using the STAR aligner.
Differential expression analysis was performed in Partek Flow (Partek Inc.) using Partek GSA algorithm
Genome_build: mm9
Supplementary_files_format_and_content: Processed data contains normizied gene expression data in a .txt file format
 
Submission date Nov 10, 2020
Last update date Dec 21, 2020
Contact name Adam Tully Waickman
Organization name SUNY Upstate Medical University
Street address 766 Irving Avenue
City Syracuse
State/province New York
ZIP/Postal code 13210
Country USA
 
Platform ID GPL19057
Series (1)
GSE161160 Targeting Interleukin-2-Inducible T-cell Kinase (ITK) differentiates GVL and GVHD in allo-HSCT
Relations
BioSample SAMN16722317
SRA SRX9467467

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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