|
| Status |
Public on Dec 21, 2020 |
| Title |
ITK_3_post_S15_R1_001.fastq.gz |
| Sample type |
SRA |
| |
|
| Source name |
Sorted T cells
|
| Organism |
Mus musculus |
| Characteristics |
cell type: Sorted T cells
time point: Post transfer
genotype: ITK KO
strain: BALB/c
|
| Growth protocol |
Sorted from fresh spleen
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNeasy Mini (Qiagen)
Illumina TruSeq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
ITK-3-post_S15
|
| Data processing |
Quantitation of transcripts against the mm9 reference genome was performed in Partek Flow (Partek Inc.) using the STAR aligner.
Differential expression analysis was performed in Partek Flow (Partek Inc.) using Partek GSA algorithm
Genome_build: mm9
Supplementary_files_format_and_content: Processed data contains normizied gene expression data in a .txt file format
|
| |
|
| Submission date |
Nov 10, 2020 |
| Last update date |
Dec 21, 2020 |
| Contact name |
Adam Tully Waickman |
| Organization name |
SUNY Upstate Medical University
|
| Street address |
766 Irving Avenue
|
| City |
Syracuse |
| State/province |
New York |
| ZIP/Postal code |
13210 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (1) |
| GSE161160 |
Targeting Interleukin-2-Inducible T-cell Kinase (ITK) differentiates GVL and GVHD in allo-HSCT |
|
| Relations |
| BioSample |
SAMN16722323 |
| SRA |
SRX9467461 |
