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Sample GSM4889345 Query DataSets for GSM4889345
Status Public on Nov 10, 2020
Title Heart neonatal replicate 2
Sample type SRA
 
Source name Whole heart
Organism Mus musculus
Characteristics tissue: Whole heart
cell type: cardiac cells
strain: C57Bl/6
age: neonate
Extracted molecule polyA RNA
Extraction protocol Animals post-natal day 1, 4 weeks, 14 weeks, 1 year and 1.5 years old were used for determination of gene expression analysis. PDGFR⍺ cardiac fibroblasts were isolated by flow cytometry from hearts of animals at the above respective ages to determine changes in gene expression in cardiac fibroblasts.
RNA was isolated from the heart tissue or cardiac fibroblasts using RNeasy Mini kit (Qiagen) and used to generate RNA-Seq libraries followed by sequencing using Illumina 4000 platform.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 4000
 
Description H-Neo-2
Data processing The reads were mapped with STAR 2.5.3a to the mouse genome (mm10).
The counts for each gene were obtained by using –quantMode GeneCounts commands in STAR, and the other parameters during alignment were set to default.
Genome_build: mm10
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample
 
Submission date Nov 09, 2020
Last update date Nov 10, 2020
Contact name Anela Tosevska
E-mail(s) anelatosevska@gmail.com
Organization name Medical Univrsity of Vienna
Department Division of Rheumatology
Street address Waehringer Guertel 18-20
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL21103
Series (2)
GSE161078 Cardiac fibroblast proliferation rates and collagen expression mature early in life and do not change with advancing age [RNA-Seq]
GSE161079 Cardiac fibroblast proliferation rates and collagen expression mature early in life and do not change with advancing age
Relations
BioSample SAMN16708975
SRA SRX9461397

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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