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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 27, 2020 |
| Title |
mouse, organoid 2 |
| Sample type |
SRA |
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| Source name |
mouse colorectal cancer
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| Organism |
Mus musculus |
| Characteristics |
cell type: cancer section
cancer type: colorectal cancer
protocol: 10X Chromium 3' RNA-seq
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| Extracted molecule |
total RNA |
| Extraction protocol |
none provided by the submitter
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
single-cell RNA-seq
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| Data processing |
cell_ranger-3.1.0
Genome_build: human: GRCh38-3.0.0, mouse: mm10-3.0.0
Supplementary_files_format_and_content: barcodes.tsv: cell barcodes
Supplementary_files_format_and_content: features.tsv: gene names
Supplementary_files_format_and_content: matrix.mtx: count matrix
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| Submission date |
Sep 30, 2020 |
| Last update date |
Oct 27, 2020 |
| Contact name |
Paula Nieto |
| E-mail(s) |
nietogarciapaula@gmail.com
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| Organization name |
CNAG
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| Department |
CNAG
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| Lab |
Single-Cell Genomics
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| Street address |
Barcelona, Barcelona Science Park - Tower I
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| City |
Barcelona |
| State/province |
Spain |
| ZIP/Postal code |
08028 |
| Country |
Spain |
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| Platform ID |
GPL24247 |
| Series (1) |
| GSE158803 |
A Single-Cell Tumor Immune Atlas for Precision Oncology |
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| Relations |
| BioSample |
SAMN16302963 |
| SRA |
SRX9219166 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4810695_mouse2_barcodes.tsv.gz |
15.7 Kb |
(ftp)(http) |
TSV |
| GSM4810695_mouse2_features.tsv.gz |
272.8 Kb |
(ftp)(http) |
TSV |
| GSM4810695_mouse2_matrix.mtx.gz |
21.9 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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