NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM4810687 Query DataSets for GSM4810687
Status Public on Oct 27, 2020
Title brain metastasis
Sample type SRA
 
Source name brain metastasis
Organism Homo sapiens
Characteristics cell type: CD45+ and CAFs
cancer type: glioblastoma metastasis from NSCLC
protocol: 10X Chromium 5' RNA-seq + TCR
Extracted molecule total RNA
Extraction protocol none provided by the submitter
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Description single-cell RNA-seq and TCR calling
Data processing cell_ranger-3.1.0
Genome_build: human: GRCh38-3.0.0, mouse: mm10-3.0.0
Supplementary_files_format_and_content: barcodes.tsv: cell barcodes
Supplementary_files_format_and_content: features.tsv: gene names
Supplementary_files_format_and_content: matrix.mtx: count matrix
 
Submission date Sep 30, 2020
Last update date Oct 27, 2020
Contact name Paula Nieto
E-mail(s) nietogarciapaula@gmail.com
Organization name CNAG
Department CNAG
Lab Single-Cell Genomics
Street address Barcelona Science Park, Carrer de Baldiri Reixac, 4, tower I, 08028 Barcelona
City Barcelona
State/province Spain
ZIP/Postal code 08028
Country Spain
 
Platform ID GPL24676
Series (1)
GSE158803 A Single-Cell Tumor Immune Atlas for Precision Oncology
Relations
BioSample SAMN16302971
SRA SRX9219158

Supplementary file Size Download File type/resource
GSM4810687_brainmet_TCR_filtered_contig_annotations.csv.gz 15.7 Kb (ftp)(http) CSV
GSM4810687_brainmet_barcodes.tsv.gz 6.0 Kb (ftp)(http) TSV
GSM4810687_brainmet_features.tsv.gz 297.6 Kb (ftp)(http) TSV
GSM4810687_brainmet_matrix.mtx.gz 3.4 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap