|
Status |
Public on Oct 27, 2020 |
Title |
brain metastasis |
Sample type |
SRA |
|
|
Source name |
brain metastasis
|
Organism |
Homo sapiens |
Characteristics |
cell type: CD45+ and CAFs cancer type: glioblastoma metastasis from NSCLC protocol: 10X Chromium 5' RNA-seq + TCR
|
Extracted molecule |
total RNA |
Extraction protocol |
none provided by the submitter
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
single-cell RNA-seq and TCR calling
|
Data processing |
cell_ranger-3.1.0 Genome_build: human: GRCh38-3.0.0, mouse: mm10-3.0.0 Supplementary_files_format_and_content: barcodes.tsv: cell barcodes Supplementary_files_format_and_content: features.tsv: gene names Supplementary_files_format_and_content: matrix.mtx: count matrix
|
|
|
Submission date |
Sep 30, 2020 |
Last update date |
Oct 27, 2020 |
Contact name |
Paula Nieto |
E-mail(s) |
nietogarciapaula@gmail.com
|
Organization name |
CNAG
|
Department |
CNAG
|
Lab |
Single-Cell Genomics
|
Street address |
Barcelona Science Park, Carrer de Baldiri Reixac, 4, tower I, 08028 Barcelona
|
City |
Barcelona |
State/province |
Spain |
ZIP/Postal code |
08028 |
Country |
Spain |
|
|
Platform ID |
GPL24676 |
Series (1) |
GSE158803 |
A Single-Cell Tumor Immune Atlas for Precision Oncology |
|
Relations |
BioSample |
SAMN16302971 |
SRA |
SRX9219158 |