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Sample GSM4808908 Query DataSets for GSM4808908
Status Public on Sep 30, 2020
Title CCS_1
Sample type SRA
 
Source name tumor
Organism Mus musculus
Characteristics genotype: HprtCre; Ewsr1-loxP; Atf1-loxP
Treatment protocol no pharmacological treatments
Growth protocol genetically induced tumor
Extracted molecule total RNA
Extraction protocol harvested and snap frozen at primary tumor morbidity
Illumina RiboZero
RNA-Seq(ribosomal RNA depletion)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description 13966X41(column header in raw counts file)
Data processing RTA v1.18.61 used for basecalling.
Trim adapters with cutadapt, Align to mm10 with STAR -2.7.5a
Generate count matrices with featureCounts and RSEM
Genome_build: mm10
Supplementary_files_format_and_content: txt, raw counts
 
Submission date Sep 29, 2020
Last update date Sep 30, 2020
Contact name Jinxiu Li
Organization name China Agricutural University
Department College of biological sciences
Lab State key laboratories of Agrobiotechnology
Street address Yuanmingyuan west road 2#
City Beijing
State/province Beijing
ZIP/Postal code 100193
Country China
 
Platform ID GPL13112
Series (2)
GSE158720 RNAseq from mouse Cre-loxP-induced Ewsr1-Atf1 translocation
GSE158726 Cre-loxP-induced Ewsr1-Atf1 translocation tumors
Relations
BioSample SAMN16288604
SRA SRX9212170

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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