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Status
Public on Apr 09, 2005
Title
Low HIV-1 infection of human PBMCs in vitro, without N. gonorrheae (2)
Sample type
RNA
Source name
Peripheral blood mononuclear cells (PBMCs)
Organism
Homo sapiens
Extracted molecule
total RNA
Description
We used Affymetrix U133A 2.0 chips to measure RNA expression levels in human PBMCs that were infected in vitro with a dosage series of HIV-1 (Bal) for 11d, followed by 6hr stimulation with N. gonorrheae.
Submission date
Apr 07, 2005
Last update date
May 27, 2005
Contact name
Monty Montano
E-mail(s)
mmontano@bu.edu
Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm
Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571
Series (1)
GSE2505
HIV-1 burden influences host response to co-infection with Neisseria gonorrhoeae in vitro
Data table header descriptions
ID_REF
VALUE
Scaled intensity values
DETECTION P-VALUE
Quality of measurement
ABS_CALL
Present, absent or marginal call
U_S_Ave
Average of unscaled, smoothed data from the low HIV-1 pair
Data table
ID_REF
VALUE
DETECTION P-VALUE
ABS_CALL
U_S_Ave
1007_s_at
133.1
0.00418
P
36.5
1053_at
580.5
0.000266
P
88.9
117_at
35.4
0.32083
A
25.2
121_at
265.8
0.019304
P
58.95
1255_g_at
12.1
0.602023
A
22.1
1294_at
849.6
0.000219
P
157.45
1316_at
19
0.397977
A
24.9
1320_at
3.1
0.910595
A
21
1405_i_at
18066.2
0.000491
P
3028.05
1431_at
2.9
0.581931
A
22.95
1438_at
16.4
0.438361
A
22.55
1487_at
499.8
0.031336
P
85.15
1494_f_at
33.5
0.397994
A
29.4
1598_g_at
150.5
0.150527
A
37.75
160020_at
168.6
0.007543
P
45.8
1729_at
829.1
0.000266
P
140.2
177_at
17.6
0.35869
A
22.8
1773_at
71.6
0.107301
A
29.45
179_at
152
0.5
A
40.35
1861_at
256.1
0.000673
P
52.9
Total number of rows: 22277 Table truncated, full table size 710 Kbytes .Supplementary data files not provided