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Sample GSM4756682 Query DataSets for GSM4756682
Status Public on Aug 31, 2020
Title PEC1_45
Sample type SRA
Source name whole blood
Organism Homo sapiens
Characteristics diagnosis: Preeclamptic
tissue: Whole blood
age: 31
gestational age: 39.8
tsh: 3.29
ft4: 0.77
sbp: 140
dbp: 110
Extracted molecule total RNA
Extraction protocol The venous blood was collected in PAXgene Blood RNA tube and extracted with the PAXgene Blood RNA Kit.
Ion AmpliSeq Transcriptome Human Gene Expression Kit Catalog Number A26325, A26326, and A26327.
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Ion Torrent Proton
Description Matrix_Pregnant_CTL_versus_Pregnant_Pre_Eclampsia.xlsx
Data processing The alignment was made by ION S5 default protocol.
We made a conversion from .bam to fastq through 'samtools fastq'.
The compression to bz2 was made through bzip2.
Genome_build: hg18 (NCBI36)
Supplementary_files_format_and_content: Matrix_Pregnant_CTL_versus_Pregnant_Pre_Eclampsia.xlsx: Excel file containing the reads of each sample.
Submission date Aug 30, 2020
Last update date Aug 31, 2020
Contact name Robson José de Almeida
Organization name Universidade Nove de Julho
Department Pós Graduação Stricto Sensu em Medicina
Lab Molecular Innovation and Biotechnology Laboratory
Street address RUA VERGUEIRO 235 249
State/province SAO PAULO
ZIP/Postal code 01504-001
Country Brazil
Platform ID GPL17303
Series (1)
GSE157148 Expression of the olfactory receptors OR6X1 and OR4E2 decreases in hypothyroidism and is reversible with levothyroxine treatment in pregnancy
BioSample SAMN15944083
SRA SRX9038001

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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