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Sample GSM46968 Query DataSets for GSM46968
Status Public on Mar 31, 2005
Title Breast - 8222
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 40
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Fibrocystic disease?: No
Pathological T: 2
Pathological N: 0(i-)
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE31519
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 801.9 P 0.000509
AFFX-BioB-M_at 997.4 P 4.4e-005
AFFX-BioB-3_at 406.7 P 9.5e-005
AFFX-BioC-5_at 1865.5 P 5.2e-005
AFFX-BioC-3_at 2335.7 P 4.4e-005
AFFX-BioDn-5_at 4145.6 P 4.4e-005
AFFX-BioDn-3_at 8836 P 5.2e-005
AFFX-CreX-5_at 19790.9 P 4.4e-005
AFFX-CreX-3_at 24440.8 P 4.4e-005
AFFX-DapX-5_at 341.6 P 9.5e-005
AFFX-DapX-M_at 840.6 P 0.000857
AFFX-DapX-3_at 1432.1 P 5.2e-005
AFFX-LysX-5_at 83.6 P 0.011384
AFFX-LysX-M_at 124.9 A 0.0727
AFFX-LysX-3_at 325.6 P 0.000169
AFFX-PheX-5_at 93.6 P 0.001248
AFFX-PheX-M_at 170.3 P 0.021902
AFFX-PheX-3_at 228.2 P 0.005565
AFFX-ThrX-5_at 145.9 P 0.003595
AFFX-ThrX-M_at 225.4 P 0.002556

Total number of rows: 54675

Table truncated, full table size 1445 Kbytes.




Supplementary file Size Download File type/resource
GSM46968.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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