|
| Status |
Public on Jul 05, 2023 |
| Title |
Arid1a f/f control rep3 |
| Sample type |
SRA |
| |
|
| Source name |
P7 Ventricles
|
| Organism |
Mus musculus |
| Characteristics |
genotype: Arid1a f/f control
tissue: Ventricles
age: P7
|
| Extracted molecule |
total RNA |
| Extraction protocol |
standard Trizol totalRNA extraction
Truseq stranded mRNA (Illumina)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
STAR_2.4.2a mapping to reference genome
read count analysis HTSeq 0.6.1
Genome_build: mm10
Supplementary_files_format_and_content: raw read counts in matrix table
|
| |
|
| Submission date |
Jul 24, 2020 |
| Last update date |
Jul 05, 2023 |
| Contact name |
Cornelis J. Boogerd |
| E-mail(s) |
k.boogerd@hubrecht.eu
|
| Organization name |
Hubrecht Institute
|
| Department |
Developmental Biology and Stem Cell Research
|
| Street address |
Uppsalalaan 8
|
| City |
Utrecht |
| ZIP/Postal code |
3584CT |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE155101 |
Arid1a is essential in cardiomyocytes for neonatal heart maturation [RNA-seq] |
| GSE155102 |
Arid1a is essential in cardiomyocytes for neonatal heart maturation |
|
| Relations |
| BioSample |
SAMN15641153 |
| SRA |
SRX8820354 |
