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GEO accession:
Sample GSM46931
Query DataSets for GSM46931
Status
Public on Mar 31, 2005
Title
Colon - 29291
Sample type
RNA
Source name
Colon
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.6
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
624.9
P
0.000446
AFFX-BioB-M_at
829.2
P
4.4e-005
AFFX-BioB-3_at
463.4
P
7e-005
AFFX-BioC-5_at
1491.6
P
5.2e-005
AFFX-BioC-3_at
2244.9
P
4.4e-005
AFFX-BioDn-5_at
4324.5
P
4.4e-005
AFFX-BioDn-3_at
8619.2
P
4.4e-005
AFFX-CreX-5_at
18872.2
P
5.2e-005
AFFX-CreX-3_at
25628.7
P
4.4e-005
AFFX-DapX-5_at
216.2
P
0.000195
AFFX-DapX-M_at
1008.3
P
0.000754
AFFX-DapX-3_at
2036.4
P
5.2e-005
AFFX-LysX-5_at
83.7
P
0.000753
AFFX-LysX-M_at
179.7
P
0.004481
AFFX-LysX-3_at
405.9
P
8.1e-005
AFFX-PheX-5_at
61.7
P
0.011384
AFFX-PheX-M_at
162
P
0.001409
AFFX-PheX-3_at
306.6
P
0.000662
AFFX-ThrX-5_at
78.7
P
0.001796
AFFX-ThrX-M_at
228.6
P
0.000258
Total number of rows:
54675
Table truncated, full table size
1441 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46931.CEL.gz
8.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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