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Sample GSM46908 Query DataSets for GSM46908
Status Public on Mar 31, 2005
Title Breast - 23975
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 24
Mammogram: No
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Pathological T: 2
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 3
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1738.7 P 0.000754
AFFX-BioB-M_at 2088.7 P 0.000509
AFFX-BioB-3_at 1221.2 P 0.00034
AFFX-BioC-5_at 4348.2 P 7e-005
AFFX-BioC-3_at 5308.1 P 4.4e-005
AFFX-BioDn-5_at 10747.5 P 4.4e-005
AFFX-BioDn-3_at 18989.2 P 5.2e-005
AFFX-CreX-5_at 45201.6 P 5.2e-005
AFFX-CreX-3_at 53994.3 P 4.4e-005
AFFX-DapX-5_at 73.8 A 0.470241
AFFX-DapX-M_at 185 A 0.51489
AFFX-DapX-3_at 21.7 A 0.834139
AFFX-LysX-5_at 90.8 A 0.216524
AFFX-LysX-M_at 122.1 A 0.529762
AFFX-LysX-3_at 67.9 A 0.216524
AFFX-PheX-5_at 15.2 A 0.904333
AFFX-PheX-M_at 17.8 A 0.921998
AFFX-PheX-3_at 174.6 A 0.327079
AFFX-ThrX-5_at 60.5 A 0.617401
AFFX-ThrX-M_at 15.7 A 0.916408

Total number of rows: 54675

Table truncated, full table size 1454 Kbytes.




Supplementary file Size Download File type/resource
GSM46908.CEL.gz 8.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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