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Sample GSM46900 Query DataSets for GSM46900
Status Public on Mar 31, 2005
Title Breast - 23944
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.53
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Mammogram: No
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma In-situ (DCIS) with focal Comedo Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 451.3 P 0.000754
AFFX-BioB-M_at 715.9 P 7e-005
AFFX-BioB-3_at 478.7 P 0.00034
AFFX-BioC-5_at 1347 P 4.4e-005
AFFX-BioC-3_at 1992.4 P 4.4e-005
AFFX-BioDn-5_at 3874.1 P 4.4e-005
AFFX-BioDn-3_at 6684.6 P 4.4e-005
AFFX-CreX-5_at 16871.5 P 5.2e-005
AFFX-CreX-3_at 20442 P 4.4e-005
AFFX-DapX-5_at 32.6 A 0.216524
AFFX-DapX-M_at 31 A 0.48511
AFFX-DapX-3_at 56.2 P 0.00762
AFFX-LysX-5_at 38.9 M 0.054213
AFFX-LysX-M_at 31 A 0.559354
AFFX-LysX-3_at 54.6 P 0.039661
AFFX-PheX-5_at 2.6 A 0.963431
AFFX-PheX-M_at 5.4 A 0.824672
AFFX-PheX-3_at 45.6 A 0.51489
AFFX-ThrX-5_at 3 A 0.843268
AFFX-ThrX-M_at 17 A 0.58862

Total number of rows: 54675

Table truncated, full table size 1441 Kbytes.




Supplementary file Size Download File type/resource
GSM46900.CEL.gz 8.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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