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Sample GSM46894 Query DataSets for GSM46894
Status Public on Mar 31, 2005
Title Breast - 23922
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 20
Mammogram: Yes
Number of years in which a mammogram was obtained?: 26-30
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 11-15
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 16-20
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 746.6 P 0.000662
AFFX-BioB-M_at 792.6 P 4.4e-005
AFFX-BioB-3_at 571.4 P 6e-005
AFFX-BioC-5_at 2026.6 P 4.4e-005
AFFX-BioC-3_at 2672.1 P 4.4e-005
AFFX-BioDn-5_at 5439.7 P 4.4e-005
AFFX-BioDn-3_at 10189.1 P 4.4e-005
AFFX-CreX-5_at 22455.7 P 5.2e-005
AFFX-CreX-3_at 29275.5 P 4.4e-005
AFFX-DapX-5_at 378.4 P 9.5e-005
AFFX-DapX-M_at 1449.7 P 0.000754
AFFX-DapX-3_at 3131.1 P 5.2e-005
AFFX-LysX-5_at 132.6 P 0.000446
AFFX-LysX-M_at 260.3 P 0.009337
AFFX-LysX-3_at 641.3 P 4.4e-005
AFFX-PheX-5_at 58.4 P 0.042962
AFFX-PheX-M_at 239.4 P 0.000509
AFFX-PheX-3_at 404.8 P 0.000169
AFFX-ThrX-5_at 86.9 P 0.023929
AFFX-ThrX-M_at 281.9 P 0.001102

Total number of rows: 54675

Table truncated, full table size 1442 Kbytes.




Supplementary file Size Download File type/resource
GSM46894.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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