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Sample GSM46889

Query DataSets for GSM46889

Status

Public on Mar 31, 2005

Title

Renal Pelvis - 23912

Sample type

RNA

Source name

Renal Pelvis

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Primary Site: Renal Pelvis
Histology: Squamous cell carcinoma

Submission date

Mar 31, 2005

Last update date

Aug 28, 2018

Contact name

Erin Curley

E-mail(s)

ecurley@intgen.org

Phone

602-343-8808

Fax

602-343-8440

URL

http://www.intgen.org

Organization name

IGC

Department

Lab

expO

Street address

445 N. 5th Street

City

Phoenix

State/province

ZIP/Postal code

85004

Country

USA

Platform ID

GPL570

Series (1)

GSE2109

Expression Project for Oncology (expO)

Relations

Reanalyzed by

GSE64985

Reanalyzed by

GSE119087

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS5, normalized
ABS_CALL	The detection value calculated by the MAS5
DETECTION P-VALUE	The detection p-value calculated by the MAS5

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	556.7	P	0.00039
AFFX-BioB-M_at	721.9	P	4.4e-005
AFFX-BioB-3_at	407.9	P	7e-005
AFFX-BioC-5_at	1319	P	4.4e-005
AFFX-BioC-3_at	1912.1	P	5.2e-005
AFFX-BioDn-5_at	3673.6	P	4.4e-005
AFFX-BioDn-3_at	5988.7	P	5.2e-005
AFFX-CreX-5_at	14158.9	P	5.2e-005
AFFX-CreX-3_at	19261.6	P	4.4e-005
AFFX-DapX-5_at	311.2	P	6e-005
AFFX-DapX-M_at	1420.3	P	0.000446
AFFX-DapX-3_at	2652.1	P	5.2e-005
AFFX-LysX-5_at	107.4	P	0.000225
AFFX-LysX-M_at	252.4	P	0.000754
AFFX-LysX-3_at	488.4	P	6e-005
AFFX-PheX-5_at	110.6	P	6e-005
AFFX-PheX-M_at	263.1	P	0.000195
AFFX-PheX-3_at	308.5	P	0.000169
AFFX-ThrX-5_at	116.8	P	0.000662
AFFX-ThrX-M_at	326.5	P	0.000109

Total number of rows: 54675

Table truncated, full table size 1440 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM46889.CEL.gz	8.0 Mb	(ftp)(http)	CEL
Processed data included within Sample table