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Sample GSM46887 Query DataSets for GSM46887
Status Public on Mar 31, 2005
Title Colon - 23908
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: American Indian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 40
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 2
Pathological N: 1
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 985.4 P 0.000662
AFFX-BioB-M_at 1250.4 P 4.4e-005
AFFX-BioB-3_at 752.7 P 7e-005
AFFX-BioC-5_at 2412.1 P 4.4e-005
AFFX-BioC-3_at 3020.2 P 4.4e-005
AFFX-BioDn-5_at 6473.8 P 4.4e-005
AFFX-BioDn-3_at 11066.5 P 4.4e-005
AFFX-CreX-5_at 27032.7 P 5.2e-005
AFFX-CreX-3_at 30951.6 P 4.4e-005
AFFX-DapX-5_at 295.2 P 0.000147
AFFX-DapX-M_at 1595.6 P 0.000662
AFFX-DapX-3_at 3711.4 P 5.2e-005
AFFX-LysX-5_at 111.5 P 0.000195
AFFX-LysX-M_at 317.6 P 0.004998
AFFX-LysX-3_at 737 P 6e-005
AFFX-PheX-5_at 84.9 P 0.012547
AFFX-PheX-M_at 228.7 P 0.004484
AFFX-PheX-3_at 505.5 P 8.1e-005
AFFX-ThrX-5_at 75.6 A 0.067661
AFFX-ThrX-M_at 338.4 P 0.00034

Total number of rows: 54675

Table truncated, full table size 1446 Kbytes.




Supplementary file Size Download File type/resource
GSM46887.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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