NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM46885 Query DataSets for GSM46885
Status Public on Mar 31, 2005
Title Breast - 23902
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 9
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 21-25
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1044.6 P 0.000662
AFFX-BioB-M_at 1431 P 4.4e-005
AFFX-BioB-3_at 881.3 P 5.2e-005
AFFX-BioC-5_at 2706.8 P 4.4e-005
AFFX-BioC-3_at 3599.2 P 4.4e-005
AFFX-BioDn-5_at 7787.9 P 4.4e-005
AFFX-BioDn-3_at 11960.5 P 4.4e-005
AFFX-CreX-5_at 30410.4 P 5.2e-005
AFFX-CreX-3_at 36236.3 P 4.4e-005
AFFX-DapX-5_at 449.2 P 0.000127
AFFX-DapX-M_at 1956 P 0.000509
AFFX-DapX-3_at 4558 P 5.2e-005
AFFX-LysX-5_at 156.7 P 0.000662
AFFX-LysX-M_at 413.8 P 0.001593
AFFX-LysX-3_at 929.2 P 7e-005
AFFX-PheX-5_at 108.7 P 0.003212
AFFX-PheX-M_at 370.3 P 0.000169
AFFX-PheX-3_at 589.1 P 4.4e-005
AFFX-ThrX-5_at 115.5 P 0.001248
AFFX-ThrX-M_at 380.4 P 0.000857

Total number of rows: 54675

Table truncated, full table size 1446 Kbytes.




Supplementary file Size Download File type/resource
GSM46885.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap