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Sample GSM46880 Query DataSets for GSM46880
Status Public on Mar 31, 2005
Title Breast - 23886
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.6
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 22
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 378.1 P 0.000754
AFFX-BioB-M_at 530.6 P 0.000127
AFFX-BioB-3_at 266.6 P 0.00039
AFFX-BioC-5_at 953.5 P 4.4e-005
AFFX-BioC-3_at 1315.9 P 4.4e-005
AFFX-BioDn-5_at 2953.2 P 4.4e-005
AFFX-BioDn-3_at 5106.5 P 7e-005
AFFX-CreX-5_at 11621.4 P 5.2e-005
AFFX-CreX-3_at 16646.2 P 4.4e-005
AFFX-DapX-5_at 196.4 P 8.1e-005
AFFX-DapX-M_at 1072.2 P 0.000857
AFFX-DapX-3_at 1688.8 P 4.4e-005
AFFX-LysX-5_at 54.8 P 0.006187
AFFX-LysX-M_at 174.7 P 0.039661
AFFX-LysX-3_at 292.5 P 6e-005
AFFX-PheX-5_at 68 P 0.001102
AFFX-PheX-M_at 138.6 P 0.001248
AFFX-PheX-3_at 287.8 P 0.000972
AFFX-ThrX-5_at 55.5 P 0.046482
AFFX-ThrX-M_at 175.2 P 0.000225

Total number of rows: 54675

Table truncated, full table size 1439 Kbytes.




Supplementary file Size Download File type/resource
GSM46880.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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