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Sample GSM46879 Query DataSets for GSM46879
Status Public on Mar 31, 2005
Title Rectum - 23882
Sample type RNA
 
Source name Rectum
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.1
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Retreatment T: 3
Retreatment N: 0
Retreatment M: 0
Retreatment Stage: 2A
Retreatment Grade: 2
Retreatment Dukes Stage: B
Primary Site: Rectum
Histology: Adenocarcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 498.4 P 0.000446
AFFX-BioB-M_at 598.6 P 4.4e-005
AFFX-BioB-3_at 339.7 P 0.000225
AFFX-BioC-5_at 1082.4 P 5.2e-005
AFFX-BioC-3_at 1534.1 P 5.2e-005
AFFX-BioDn-5_at 3491.3 P 4.4e-005
AFFX-BioDn-3_at 6180.6 P 7e-005
AFFX-CreX-5_at 13287.5 P 5.2e-005
AFFX-CreX-3_at 17684.2 P 4.4e-005
AFFX-DapX-5_at 226.5 P 7e-005
AFFX-DapX-M_at 1242.5 P 0.000754
AFFX-DapX-3_at 2609.7 P 5.2e-005
AFFX-LysX-5_at 113.3 P 0.000169
AFFX-LysX-M_at 240.8 P 0.002023
AFFX-LysX-3_at 565.9 P 5.2e-005
AFFX-PheX-5_at 107.6 P 0.002556
AFFX-PheX-M_at 205.7 P 0.000446
AFFX-PheX-3_at 373.8 P 6e-005
AFFX-ThrX-5_at 83.8 P 0.006871
AFFX-ThrX-M_at 214 P 0.000127

Total number of rows: 54675

Table truncated, full table size 1441 Kbytes.




Supplementary file Size Download File type/resource
GSM46879.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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