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Sample GSM46877 Query DataSets for GSM46877
Status Public on Mar 31, 2005
Title Colon - 23876
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.42
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Chewing Tobacco
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 12
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 426.2 P 0.000857
AFFX-BioB-M_at 567.9 P 9.5e-005
AFFX-BioB-3_at 339.8 P 0.000297
AFFX-BioC-5_at 961.1 P 5.2e-005
AFFX-BioC-3_at 1453.1 P 5.2e-005
AFFX-BioDn-5_at 2852 P 4.4e-005
AFFX-BioDn-3_at 5492.3 P 6e-005
AFFX-CreX-5_at 13061.1 P 5.2e-005
AFFX-CreX-3_at 16949.7 P 4.4e-005
AFFX-DapX-5_at 398.7 P 4.4e-005
AFFX-DapX-M_at 1529.4 P 0.000662
AFFX-DapX-3_at 2870.8 P 4.4e-005
AFFX-LysX-5_at 138.2 P 0.000581
AFFX-LysX-M_at 239 P 0.00762
AFFX-LysX-3_at 576.3 P 7e-005
AFFX-PheX-5_at 118.5 P 0.000169
AFFX-PheX-M_at 317 P 0.000169
AFFX-PheX-3_at 406.1 P 0.00011
AFFX-ThrX-5_at 89.5 P 0.009337
AFFX-ThrX-M_at 250.1 P 9.4e-005

Total number of rows: 54675

Table truncated, full table size 1443 Kbytes.




Supplementary file Size Download File type/resource
GSM46877.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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