NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM46873 Query DataSets for GSM46873
Status Public on Mar 31, 2005
Title Breast - 2323
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.1
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 0-5
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1495.5 P 0.000581
AFFX-BioB-M_at 2487.8 P 0.000044
AFFX-BioB-3_at 1424.7 P 0.000044
AFFX-BioC-5_at 3280.3 P 0.000044
AFFX-BioC-3_at 4251.3 P 0.000044
AFFX-BioDn-5_at 11023.7 P 0.000044
AFFX-BioDn-3_at 17051.4 P 0.000044
AFFX-CreX-5_at 41675.3 P 0.000044
AFFX-CreX-3_at 46996.6 P 0.000044
AFFX-DapX-5_at 36.2 A 0.216524
AFFX-DapX-M_at 154.8 M 0.054213
AFFX-DapX-3_at 303.6 P 0.000754
AFFX-LysX-5_at 58.1 M 0.058284
AFFX-LysX-M_at 10.6 A 0.794268
AFFX-LysX-3_at 75.3 M 0.050229
AFFX-PheX-5_at 65.4 A 0.205732
AFFX-PheX-M_at 45.4 A 0.51489
AFFX-PheX-3_at 91.8 A 0.287743
AFFX-ThrX-5_at 22.5 A 0.686277
AFFX-ThrX-M_at 41.1 A 0.227617

Total number of rows: 54675

Table truncated, full table size 1445 Kbytes.




Supplementary file Size Download File type/resource
GSM46873.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap