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GEO accession:
Sample GSM46864
Query DataSets for GSM46864
Status
Public on Mar 31, 2005
Title
Colon - 22245
Sample type
RNA
Source name
Colon
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.8
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Nausea
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Mucinous Carcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
441.7
P
0.000857
AFFX-BioB-M_at
608.8
P
0.00034
AFFX-BioB-3_at
371.4
P
0.001248
AFFX-BioC-5_at
1204
P
5.2e-005
AFFX-BioC-3_at
1558.5
P
4.4e-005
AFFX-BioDn-5_at
2832.9
P
4.4e-005
AFFX-BioDn-3_at
6491.4
P
7e-005
AFFX-CreX-5_at
13943.1
P
5.2e-005
AFFX-CreX-3_at
18924.5
P
4.4e-005
AFFX-DapX-5_at
58.8
A
0.165861
AFFX-DapX-M_at
193.6
P
0.00844
AFFX-DapX-3_at
390.9
P
0.000581
AFFX-LysX-5_at
51.1
M
0.054213
AFFX-LysX-M_at
42.2
A
0.313723
AFFX-LysX-3_at
101.9
P
0.000662
AFFX-PheX-5_at
10.9
A
0.672921
AFFX-PheX-M_at
11.1
A
0.60308
AFFX-PheX-3_at
143.3
A
0.108979
AFFX-ThrX-5_at
18.1
A
0.470241
AFFX-ThrX-M_at
23.9
A
0.48511
Total number of rows:
54675
Table truncated, full table size
1442 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46864.CEL.gz
8.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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