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Sample GSM46864 Query DataSets for GSM46864
Status Public on Mar 31, 2005
Title Colon - 22245
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.8
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Nausea
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Mucinous Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 441.7 P 0.000857
AFFX-BioB-M_at 608.8 P 0.00034
AFFX-BioB-3_at 371.4 P 0.001248
AFFX-BioC-5_at 1204 P 5.2e-005
AFFX-BioC-3_at 1558.5 P 4.4e-005
AFFX-BioDn-5_at 2832.9 P 4.4e-005
AFFX-BioDn-3_at 6491.4 P 7e-005
AFFX-CreX-5_at 13943.1 P 5.2e-005
AFFX-CreX-3_at 18924.5 P 4.4e-005
AFFX-DapX-5_at 58.8 A 0.165861
AFFX-DapX-M_at 193.6 P 0.00844
AFFX-DapX-3_at 390.9 P 0.000581
AFFX-LysX-5_at 51.1 M 0.054213
AFFX-LysX-M_at 42.2 A 0.313723
AFFX-LysX-3_at 101.9 P 0.000662
AFFX-PheX-5_at 10.9 A 0.672921
AFFX-PheX-M_at 11.1 A 0.60308
AFFX-PheX-3_at 143.3 A 0.108979
AFFX-ThrX-5_at 18.1 A 0.470241
AFFX-ThrX-M_at 23.9 A 0.48511

Total number of rows: 54675

Table truncated, full table size 1442 Kbytes.




Supplementary file Size Download File type/resource
GSM46864.CEL.gz 8.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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