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Sample GSM46861 Query DataSets for GSM46861
Status Public on Mar 31, 2005
Title Colon - 22237
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Pipe
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Abdominal Pain
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 880.6 P 0.000754
AFFX-BioB-M_at 1127.5 P 4.4e-005
AFFX-BioB-3_at 563.1 P 9.5e-005
AFFX-BioC-5_at 2139.9 P 4.4e-005
AFFX-BioC-3_at 2850.9 P 4.4e-005
AFFX-BioDn-5_at 5707.3 P 4.4e-005
AFFX-BioDn-3_at 9736 P 4.4e-005
AFFX-CreX-5_at 24330.7 P 5.2e-005
AFFX-CreX-3_at 31431 P 4.4e-005
AFFX-DapX-5_at 635.4 P 8.1e-005
AFFX-DapX-M_at 1387 P 0.000972
AFFX-DapX-3_at 2395.8 P 5.2e-005
AFFX-LysX-5_at 150 P 0.000972
AFFX-LysX-M_at 210.8 P 0.011384
AFFX-LysX-3_at 486.9 P 0.000224
AFFX-PheX-5_at 138.1 P 0.000972
AFFX-PheX-M_at 234.7 P 0.000857
AFFX-PheX-3_at 329.4 P 0.000509
AFFX-ThrX-5_at 163.6 P 0.010317
AFFX-ThrX-M_at 305.8 P 0.000147

Total number of rows: 54675

Table truncated, full table size 1446 Kbytes.




Supplementary file Size Download File type/resource
GSM46861.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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