NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM46857 Query DataSets for GSM46857
Status Public on Mar 31, 2005
Title Colon - 22227
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.23
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Cigars
Type of Tobacco Use: Pipe
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Screening studies performed?: Yes
Diagnosis made by: Stool blood test (guiac)
Primary Site: Colon
Histology: Adenocarcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 706.6 P 0.000662
AFFX-BioB-M_at 915 P 5.2e-005
AFFX-BioB-3_at 401.4 P 0.000127
AFFX-BioC-5_at 1474.9 P 4.4e-005
AFFX-BioC-3_at 1812.1 P 5.2e-005
AFFX-BioDn-5_at 4078.7 P 4.4e-005
AFFX-BioDn-3_at 7072.5 P 5.2e-005
AFFX-CreX-5_at 18738.5 P 4.4e-005
AFFX-CreX-3_at 20160.1 P 5.2e-005
AFFX-DapX-5_at 428.2 P 0.000147
AFFX-DapX-M_at 1119.4 P 0.000754
AFFX-DapX-3_at 2092.9 P 5.2e-005
AFFX-LysX-5_at 112 P 0.001246
AFFX-LysX-M_at 197.9 P 0.011384
AFFX-LysX-3_at 387.5 P 0.000169
AFFX-PheX-5_at 141.9 P 0.001593
AFFX-PheX-M_at 209.4 P 0.001593
AFFX-PheX-3_at 306.5 P 0.000857
AFFX-ThrX-5_at 151 P 0.000662
AFFX-ThrX-M_at 223.2 P 4.4e-005

Total number of rows: 54675

Table truncated, full table size 1445 Kbytes.




Supplementary file Size Download File type/resource
GSM46857.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap