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Sample GSM46852 Query DataSets for GSM46852
Status Public on Mar 31, 2005
Title Breast - 22214
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 32
Mammogram: Yes
Number of years in which a mammogram was obtained?: 16-20
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 11-15
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 962.6 P 0.000446
AFFX-BioB-M_at 1256.9 P 4.4e-005
AFFX-BioB-3_at 934.9 P 5.2e-005
AFFX-BioC-5_at 2694.6 P 4.4e-005
AFFX-BioC-3_at 3872.1 P 4.4e-005
AFFX-BioDn-5_at 7694.7 P 4.4e-005
AFFX-BioDn-3_at 11178.5 P 4.4e-005
AFFX-CreX-5_at 29261.4 P 4.4e-005
AFFX-CreX-3_at 35398 P 4.4e-005
AFFX-DapX-5_at 43.8 A 0.455413
AFFX-DapX-M_at 64.3 A 0.340661
AFFX-DapX-3_at 134.6 P 0.028457
AFFX-LysX-5_at 44.1 M 0.058444
AFFX-LysX-M_at 10.1 A 0.921998
AFFX-LysX-3_at 47.3 A 0.0727
AFFX-PheX-5_at 5.3 A 0.971543
AFFX-PheX-M_at 2.6 A 0.973899
AFFX-PheX-3_at 76.8 A 0.382599
AFFX-ThrX-5_at 8.5 A 0.659339
AFFX-ThrX-M_at 15.2 A 0.631573

Total number of rows: 54675

Table truncated, full table size 1445 Kbytes.




Supplementary file Size Download File type/resource
GSM46852.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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